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WANG Yingbin, JIAO Yan. Estimating time-based instantaneous total mortality rate based on the age-structured abundance index[J]. Journal of Oceanology and Limnology, 2015, 33(3): 559-576

Estimating time-based instantaneous total mortality rate based on the age-structured abundance index

WANG Yingbin1, JIAO Yan2
1 Fishery College, Zhejiang Ocean University, Zhoushan 316022, China;
2 Department of Fish and Wildlife Conservation, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
Abstract:
The instantaneous total mortality rate (Z) of a fish population is one of the important parameters in fisheries stock assessment. The estimation of Z is crucial to fish population dynamics analysis, abundance and catch forecast, and fisheries management. A catch curve-based method for estimating time-based Z and its change trend from catch per unit effort (CPUE) data of multiple cohorts is developed. Unlike the traditional catch-curve method, the method developed here does not need the assumption of constant Z throughout the time, but the Z values in n continuous years are assumed constant, and then the Z values in different n continuous years are estimated using the age-based CPUE data within these years. The results of the simulation analyses show that the trends of the estimated time-based Z are consistent with the trends of the true Z, and the estimated rates of change from this approach are close to the true change rates (the relative differences between the change rates of the estimated Z and the true Z are smaller than 10%). Variations of both Z and recruitment can affect the estimates of Z value and the trend of Z. The most appropriate value of n can be different given the effects of different factors. Therefore, the appropriate value of n for different fisheries should be determined through a simulation analysis as we demonstrated in this study. Further analyses suggested that selectivity and age estimation are also two factors that can affect the estimated Z values if there is error in either of them, but the estimated change rates of Z are still close to the true change rates. We also applied this approach to the Atlantic cod (Gadus morhua) fishery of eastern Newfoundland and Labrador from 1983 to 1997, and obtained reasonable estimates of time-based Z.
Key words:    instantaneous total mortality rate (Z)|catch per unit effort (CPUE)|time-based|change trend|simulation|selectivity|incorrect age estimation   
Received: 2014-05-23   Revised: 2014-10-30
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References:
Baird J W, Bishop C A, Brodie W B, Murphy E F. 1992. An assessment of the cod stock in NAFO divisions 2J3KL.NAFO Scientific Council Research Document 92/18.
Beverton R J H, Holt S J. 1956. A review of methods for estimating mortality rates in exploited fish populations with special reference to sources of bias in catch sampling.Rapp. P.-V. Réun. CIEM, 140 : 67-83.
Butler S A. 1982. Estimation of fish mortality. Transactions of the American Fisheries Society, 111 : 535-537.
Chapman D G, Robson D S. 1960. The analysis of a catch curve. Biometrics, 16 : 354-368.
Deriso R B, Maunder M N, Pearson W H. 2008. Incorporating covariates into fisheries stock assessment models with application to Pacific herring of Prince William Sound,Alaska. Ecol ogical Appl ication, 18 : 1 270-1 286.
Drinkwater K F. 2005. The response of Atlantic cod (Gadus morhua) to future climate change. ICES Journal of Mar ine Sci ence, 62 : 1 327-1 337.
FAO. 2003. Fish Stock Assessment Manual. FAO Fisheries technical paper, Rome. p.393.
Fay G, Punt A E, Smith A D M. 2011. Impacts of spatial uncertainty on performance of age structure-based harvest strategies for blue eye trevalla (Hyperoglyphe antarctica).
Fish eries Res earch, 110 : 391-407.
Gaertner D. 2010. Estimates of historic changes in total mortality and selectivity for Eastern Atlantic skipjack (Katsuwonus pelamis) from length composition data.Aqual ic Living Resour ce, 23 : 3-11.
Haddon M. 2001. Modelling and Quantitative Methods in Fisheries. Chapman and Hall, New York. 405p.Halliday R G, Pinhorn A T. 2009. The roles of fishing and environmental change in the decline of Northwest Atlantic groundfish populations in the early 1990's. Fish eries Res earch, 97 : 163-182.
Harley S J, Myers R A, Dunn A. 2001. Is catch-per-unit-effort proportional to abundance? Canadian Journal of Fisheries and Aquatic Sciences, 58 : 1 760-1 772.
Hilborn R, Walters C J. 1992. Quantitative Fisheries Stock Assessment: Choice, Dynamics and Uncertainty. Chapman and Hall, New York. 569p.
Hoenig J M. 1983. Empirical use of longevity data to estimate mortality rates. U. S. Fish ery Bull etin, 8 2 : 898-903.
Hutchings J A, Ferguson M. 2000. Temporal changes in harvesting dynamics of Canadian inshore fisheries for northern Atlantic Cod, Gadus morhua. Can adian J ournal of Fish eries and Aquat ic Sci ence, 57 : 805-814.
Hutchings J A, Myers R A. 1994. What can be learned from the collapse of a renewable resource? Atlantic cod, Gadus morhua, of Newfoundland and Labrador. Can adian J ournal of Fish eries and Aquat ic Sci ence, 51 : 2 126-2 146.
Jensen A L. 1996. Ratio estimation of mortality using catch curves. Fish eries Re s earch, 27 : 61-67.
Jiao Y, Chen Y, Schneider D, Wroblewski J. 2004. A simulation study of impacts of error structure on modeling stockrecruitment data using generalized linear models.Can adian J ournal of Fish eries and Aquat ic Sci ence, 61 : 122-133.
Jiao Y, Smith E P, O'Reilly R, Orth D J. 2012. Modelling nonstationary natural mortality in catch-at-agemodels. ICES Journal of Mar ine Sci ence, 69 : 105-118.
King M. 2007. Fisheries Biology, Assessment and Management.Second Edition. Blackwell, Malden. 400p.
Kizner Z I, Vasilyev D A. 1997. Instantaneous separable VPA (ISVPA). ICES Journal of Mar ine Sci ence, 54 : 399-411.
Lilly G R, Shelton P A, Brattey J, Cadigan N G, Healey B P,Murphy E F, Stansbury D E. 2001. An assessment of the cod stock in NAFO Divisions 2J+3KL. DFO Canadian Science Advisory Secretariat Research Document 2001/044. 148p.
Lorenzen K. 2005. Population dynamics and potential of fisheries stock enhancement: practical theory for assessment and policy analysis. Philosophical Transactions of the Royal Society B, 360 : 171-189.
NRC (National Research Council). 1998. Improving Methods for Fish Stock Assessment. National Academy Press,Washington DC.Pope J G, Shepherd J G. 1982. A simple method for the consistent interpretation of catch-at-age data. Journal du Conseil / Conseil Permanent International pour l'Exploration de la Mer, 40 : 176-184.
Quinn II T J, Deriso R B. 1999. Quantitative Fish Dynamics.Oxford University Press, New York. 542p.
Ricker W E. 1971. Derzhavin's biostatistical method of population analysis. J ournal of the Fisheries Research Board of Canada, 28 : 1 666-1 672.
Rijndorp A D, Daan N, Dekker W. 2006. Partial fishing mortality per fishing trip: a useful indicator of effective fishing effort in mixed demersal fisheries. ICES Journal of Mar ine Sci ence, 63 : 556-566.
Rose G A, deYoung B, Kulka D W, Goddard S V, Fletcher G L. 2000. Distribution shifts and overfishing the northern cod (Gadus morhua): a view from the ocean. Can adian J ournal of Fish eries and Aquat ic Sci ence, 57 : 644-664.
Rose G A. 2004. Reconciling overfishing and climate change with stock dynamics of Atlantic cod (Gadus morhua) over 500 years. Can adian J ournal of Fish eries and Aquat ic Sci ence, 61 : 1 553-1 557.
Schnute J T, Haigh R. 2007. Compositional analysis of catch curve data, with an application to Sebastes maliger. ICES J ournal of Mar ine Sci ence, 64 : 218-233.
Shelton P A, Stansbury D E, Murphy E F, Lilly G R, Brattey J. 1996. An assessment of the cod stock in NAFO Divisions 2J+3KL. DFO Atlantic Fisheries Research Document 96/80.
Thorson J T, Prager M D. 2011. Better catch curves: incorporating age-specific natural mortality and logistic selectivity. Transactions of the American Fisheries Society, 140 : 356-366.
Thorson J T, Simpfendorfer C A. 2009. Gear selectivity and sample size effects on growth curve selection in shark age and growth studies. Fish eries Res earch, 98 : 75-84.
Vetter E F. 1988. Estimation of natural mortality in fish stock: a review. Fish ery Bull etin, 86 : 25-43.
Wang Y B, Liu Q. 2006. Estimation of natural mortality using statistical analysis of fisheries catch-at-age data. Fish eries Res earch, 78 : 342-351.
Wayte S E, Klaer N L. 2010. An effective harvest strategy using improved catch curves. Fish eries Res earch, 106 : 310-320.
Worcester T, Brattey J, Chouinard G A, Clark D, Clark K J,Deault J, Fowler M, Frechet A, Gauthier J, Healey B,Maddock Parsons D, Mohn R, Morgan M J, Murhpy E F,Schwab P, Swain D P, Treble M. 2009.Status of AtlanticCod (Gadus morhua) in 2009. DFO Can. Sci. Advis. Sec.Res. Doc. 2009/027. v+112p.
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